inferring participant home directory and clarifying validation data path

location

Author: Edwards

Task_1/FeTS_Challenge.ipynb

@@ -725,15 +725,19 @@
    "outputs": [],
    "source": [
     "from fets_challenge import model_outputs_to_disc\n",
+    "from pathlib import Path\n",
+    "\n",
+    "# infer participant home folder\n",
+    "home = str(Path.home())\n",
     "\n",
     "# you will need to specify the correct experiment folder and the parent directory for\n",
     "# the data you want to run inference over\n",
     "checkpoint_folder='experiment_1'\n",
-    "data_path = '/raid/edwardsb/validation_set'\n",
+    "data_path = </PATH/TO/CHALLENGE_VALIDATION_DATA>\n",
     "\n",
     "# you can keep these the same if you wish\n",
-    "best_model_path = '/home/edwardsb/.local/workspace/checkpoint/' + checkpoint_folder + '/best_model.pkl'\n",
-    "outputs_path = '/home/edwardsb/.local/workspace/checkpoint/' + checkpoint_folder + '/model_outputs'\n",
+    "best_model_path = os.path.join(home, '.local/workspace/checkpoint', checkpoint_folder, 'best_model.pkl')\n",
+    "outputs_path = os.path.join(home, '.local/workspace/checkpoint', checkpoint_folder, 'model_outputs')\n",
     "\n",
     "\n",
     "# Using this best model, we can now produce NIfTI files for model outputs \n",